T-large granular lymphocytic leukaemia

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Haematolymphoid Tumours (WHO Classification, 5th ed.)

Primary Author(s)*

Nicolas LaScala, DO

Michelle Don, MD, MS

WHO Classification of Disease

Structure Disease
Book Haematolymphoid Tumours (5th ed.)
Category T-cell and NK-cell lymphoid proliferations and lymphomas
Family Mature T-cell and NK-cell neoplasms
Type Mature T-cell and NK-cell leukaemias
Subtype(s) T-large granular lymphocytic leukaemia

Related Terminology

Acceptable T-cell lymphoproliferative disease of granular lymphocytes; T-cell large granular lymphocytic leukaemia
Not Recommended T-cell large granular lymphocytosis; T-gamma lymphoproliferative disease

Gene Rearrangements

No know chromosomal rearrangements.

Driver Gene Fusion(s) and Common Partner Genes Molecular Pathogenesis Typical Chromosomal Alteration(s) Prevalence -Common >20%, Recurrent 5-20% or Rare <5% (Disease) Diagnostic, Prognostic, and Therapeutic Significance - D, P, T Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
N/A N/A N/A N/A N/A N/A N/A N/A

Individual Region Genomic Gain/Loss/LOH

No known recurrent copy number gain/loss/LOH, chromosomal abnormalities have been reported in a few cases.[1]

Chr # Gain, Loss, Amp, LOH Minimal Region Cytoband and/or Genomic Coordinates [Genome Build; Size] Relevant Gene(s) Diagnostic, Prognostic, and Therapeutic Significance - D, P, T Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
N/A N/A N/A N/A N/A N/A N/A

Characteristic Chromosomal or Other Global Mutational Patterns

No characteristic chromosomal patterns have been identified.

One reported case with unique cytogenetic findings of a γδ variant T-cell LGL include: interstitial deletion of 3p21.31, monosomy X, trisomy 5, monosomy 21, and CN-LOH, located at 17q.[2]

Chromosomal Pattern Molecular Pathogenesis Prevalence -

Common >20%, Recurrent 5-20% or Rare <5% (Disease)

Diagnostic, Prognostic, and Therapeutic Significance - D, P, T Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
N/A N/A N/A N/A N/A N/A

Gene Mutations (SNV/INDEL)

Somatic activating STAT3 and STAT5b mutations are the most common SNVs in T-LGL.

Gene Genetic Alteration Tumor Suppressor Gene, Oncogene, Other Prevalence -

Common >20%, Recurrent 5-20% or Rare <5% (Disease)

Diagnostic, Prognostic, and Therapeutic Significance - D, P, T   Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
STAT3[3] Gain of function in src-like homologue 2 (SH2) domain of STAT 3, frequently affecting codons Y640 or D661[3]. Codons N647I[4],K658S[4], and K658F[5] are also affected Other [6] Common [7] D, P, T WHO, NCCN STAT3 mutation has been associated with statistically significant neutropenia, thrombocytopenia, and reduced numbers of most normal residual blood-leukocyte subsets[5]

STAT3 mutations are associated with a worse prognosis and reduced overall survival [3][8]

Patients with STAT 3 mutation required treatment more frequently when compared to patients with STAT3 wild type[9]

One prospective study showed a predictive response to methotrexate therapy in a small group of patients with STAT3 Y640F mutated genotype[10]

STAT3 mutation can also be seen in other T-cell lymphomas including hepatosplenic T-cell lymphoma[11]

17% of patients with STAT3 mutations, had multiple mutations in the STAT3 gene, solely in cytotoxic CD8+ or NK cells.[12]

STAT5B [3]
Gain of function src-like homologue 2 (SH2) domain of STAT5.

Mutations include[13]:

N642H

Y665F

Q706L

S715F

T628S

P685R

V712E mutation of STAT5B is in the transactivation domain[13]

Mutations in the coiled-coil domain: CCD, Q220H [13]

Mutations in the DNA binding domain: DBD, E433G/K [13]

Mutations in the inter-domain region: P702A [13]

Other [14] Rare [1] D,P,T WHO, NCCN N642H mutation (associated with more aggressive disease)[15][16]

Clones can acquire multiple STAT5B mutations [13]

STAT5B mutations can also be seen in other T-cell lymphomas including hepatosplenic T-cell lymphoma[11]

N642H mutation is associated with CD3+/CD56+ phenotype[16]

STAT5B mutations are more common in CD4+ T-LGLL than in CD8+ T-LGLL [13][17]

TNFAIP3 [3] Loss of function

Somatic mutations:

Y353X

K354K

Q741

E630X

A717T

F127C [18]

Other [19] Recurrent [20] P,T WHO TNFAIP 3 mutation has been correlated with increased overall survival [21]

TNFAIP3 itself is a NF‐κB target gene[22]

In one study three of four of the patients with non‐synonymous TNFAIP3 alterations also harbored a STAT3 mutation (p  = 0.004)[4]

TET2 [3] Loss of function [23] Other [24] Common [20] N/A WHO Found to be the most prevalent mutation in myeloid neoplasm or myeloid clonal hematopoiesis coexisting with T-LGLL [25]
BCL11B [3] Missense H126R[26] Other[27] Rare[26] N/A WHO BCL11B is required for T-cell survival and overexpression could effectively increase T-cell activation and proliferation.[26]
FLT3[3] A high-impact Asp228Gly variant on JAK STAT has been demonstrated [28] Other[29] Rare[28] N/A WHO Connects STAT to the MAPK-Ras-ERK pathway and to IL-15[28]
PTPN23[3] R641Q[30] Other[31] Rare[30] N/A WHO Demonstrated in a patient with CD4+ T-LGLL without a STAT5B or STAT3 mutation[30]
KMT2D[23] Loss of function[23] Other[32] Recurrent[20] N/A None Frequent co-occurrence of KMT2D and STAT3 mutations[23]
TRAF3 [25] c.650A>T p.E217V[25] Other[33] Rare[25] N/A None Mutated putative driver[25]
CLIP3[25] c.908A>T p.D303V

c.917A>T p.K306M[25]

Other[34] Rare[25] N/A None Mutated putative driver[25]
FBXW2[25] c.683C>G p.A228G [25] Other[35] Rare[25] N/A None Mutated putative driver[25]
CREBBP[25] c.1178A>G p.N393S

c.4306T>C p.C1436R[25]

Other[36] Rare[25] N/A None Mutated putative driver [25]
CCL2 [37] SNV, somatic Mutation  

P46R[37]

Other[38] Rare[37] N/A None CCL22 co-occurring with a STAT3 mutation in a CD8+ TCR αβ T-LGLL[37]

CCL22 co-occurring with a STAT3 mutation in a CD8+ TCR αβ T-LGLL[37]

Note: A more extensive list of mutations can be found in cBioportal, COSMIC, and/or other databases. When applicable, gene-specific pages within the CCGA site directly link to pertinent external content.

Epigenomic Alterations

Epigenetic inactivation of JAK/STAT pathway inhibitors

  • SOCS3 has a crucial role in regulating STAT3 activation[39]
  • An epigenetic inhibition mechanism to SOCS3 gene is hypothesized[39]
  • KIR3DL1 has been shown to be down-modulated by hypermethylation of the promoter[39]
  • Mutations in KMT2D and TET2 have been found to significantly co-occur with STAT3 mutations[23]

Genes and Main Pathways Involved

Gene; Genetic Alteration Pathway Pathophysiologic Outcome
JAK/STAT[1] Constitutive activation Dysregulation of apoptosis
NK-kB[1] Pathway activation Preventing apoptosis
FAS and FASL[1] Resistance to FAS mediated apoptosis Activation of pro-survival pathways which is postulated to lead to neutropenia
RAS/RAF1/MEK1/ERK[1] Overactive RAS Constitutive activation of RAS and ERK
PI3K/AKT[1] Dysregulation

Genetic Diagnostic Testing Methods

  • Morphologic assessment, flow cytometry and immunohistochemistry
  • PCR to assess for clonality, T-cell receptor (TCR) gene rearrangements
    • TCR gamma (TCRG) gene is rearranged in all cases, regardless of the type of TCR expressed, thus proves clonality[3]
    • Can be helpful in differentiating a reactive lymphocytosis from clonal T-LGL's
      • NK LGL proliferations do not express TCR, making assessment of clonality difficult[1]
      • Expression of activating isoforms of killer immunoglobulin-like receptors (KIR) can be used as a surrogate marker of clonality in NK LGL[1]
  • Myeloid neoplasms may present with clonal large granular lymphocyte expansion with STAT3/STAT5B mutations. Next generation sequencing can be diagnostically useful in these cases[40]

Familial Forms

No known familiar forms as of yet.

Additional Information

PI3K-Akt has been found to be upregulated in KLRG1- CD8+ T-LGLL. Studies are being conducted to examine treatment with linperlisib.[41]

Myleoid clonal hematopoiesis is associated with the presence of cytopenia in LGLL[25]

Links

Hepatosplenic T-cell lymphoma

References

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Notes

*Citation of this Page: LaScala N, Don M“T-large granular lymphocytic leukaemia”. Compendium of Cancer Genome Aberrations (CCGA), Cancer Genomics Consortium (CGC), updated 02/17/2026, https://ccga.io/index.php/HAEM5:T-large_granular_lymphocytic_leukaemia.


*Primary authors will typically be those that initially create and complete the content of a page.  If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the Associate Editor or other CCGA representative.  When pages have a major update, the new author will be acknowledged at the beginning of the page, and those who contributed previously will be acknowledged below as a prior author.

Prior Author(s): N/A

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