Associate Editor Instructions: Difference between revisions - Compendium of Cancer Genome Aberrations

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==Introduction==

*IMPORTANT: '''On the [[Volunteers]] Page, Track Progress in Real Time''' of assigning author to pages (pending) and completion of pages (complete) as well as the date you reviewed the page and any notes of importance such as "non-WHO entity page" or check permissions for a figure.

*IMPORTANT: '''On the [[Volunteers]] Page, Track Progress in Real Time''' of assigning author to pages (pending) and completion of pages (complete) as well as the date you reviewed the page and any notes of importance such as "non-WHO entity page" or check permissions for a figure. Open spaces in your area on this spreadsheet will alert the Editor-in-Chief to continue connecting potential authors with you.

*Authors who are interested in the area in which you're Associate Editor, will be connected with you for the following '''Onboarding Process''':

#Ensure the new author has completed the '''[https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 Volunteer Form]'''.

#Create a username and password for a new author (see section below). IMPORTANT: Add the information to the [[User Access Log]].

#Refer them to the [[Author Instructions]], which contains information including links to the video tutorial, Word version of page templates, policy on figure inclusion, and how to cite CCGA pages.

#Emphasize to authors to please use the supplied tables if applicable.

#Once a page is assigned, ensure the author's name is added to the top of the page for clarity that the page is in progress.

#If the author is a trainee, ensure they are working with a mentor or perform the mentor function if you're able to do so.

#Set up a reasonable due date for the author. For example, propose 4 weeks and if author agrees, send an Outlook invite for that due date that has a one week prior reminder prior to this deadline.

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#Prioritize use of the tables, including helping the author to convert the content or doing so yourself if applicable. If a table is not needed based on current knowledge, remove it so that the page doesn’t look unfinished, but if in the future information is added that could be put in one of the tables, convert it.

#Ensure the authors have inserted references in the standard format using the PubMed extension.

#Ensure the under construction note at the ~~tope~~ of the page has been removed.

#Ensure the under construction note at the top of the page has been removed.

*Once a page has completed content, '''Add Categories and Page Citation Information''':

#Add the Categories so that this page is now linked to the searching functions on the homepage (see section below).

#Add the citation for the page in the Notes section at the bottom. For example: * Citation of this Page: Naeini Y, Quintero-Rivera F. “Myeloid Sarcoma”. Compendium of Cancer Genome Aberrations (CCGA), Cancer Genomics Consortium (CGC), updated ~~? [accessed ?]~~, ~~[[Myeloid Sarcoma|~~www.ccga.io/index.php/Myeloid_Sarcoma]]. ~~See~~ this in ~~action~~ at https://~~ccga~~.io/~~index.php~~/~~Acute_Myeloid_Leukemia_(AML)_and_Related_Precursor_Neoplasms~~.

#Add the citation for the page in the Notes section at the bottom. For example: *''Citation of this Page'': Naeini Y, Quintero-Rivera F. “Myeloid Sarcoma”. Compendium of Cancer Genome Aberrations (CCGA), Cancer Genomics Consortium (CGC), updated {{REVISIONMONTH}}/{{REVISIONDAY}}/{{REVISIONYEAR}}, <nowiki>https://www.ccga.io/index.php/Myeloid_Sarcoma</nowiki>. See this in action at the bottom of [[Acute Myeloid Leukemia (AML) and Related Precursor Neoplasms|Example]].

##In order to have the updated section autopopulate on each page, you must use wiki-specific syntax. Therefore, copy this example from the "Edit source" tab and place it in the correct location on the target page using the "Edit" tab or manually type or paste in the yellow highlighted text below.

[[File:Citing page image.png|center|thumb|alt=]]

*'''Add WHO Copyright Information''':

#Add the WHO copyright permission information for any disease overview page that shows WHO classification structure in the Notes section at the bottom (last entry). You must use wiki-specific syntax. Therefore, copy the following information using the wiki syntax in the "Edit source" tab, add it in the appropriate place near the bottom of the target page using the "Edit source" tab (make sure there's a space after the previous entry): <nowiki>*</nowiki>The hierarchical tumour classification structure displayed on this page is reproduced from the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours] with permission from the copyright holder, ©International Agency for Research on Cancer.

==How to Create a New User Account==

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 ==Introduction==
-*IMPORTANT: '''<u>On the [[Volunteers]] Page, Track Progress in Real Time</u>''' of assigning author to pages (pending) and completion of pages (complete) as well as the date you reviewed the page and any notes of importance such as "non-WHO entity page" or check permissions for a figure.
+*IMPORTANT: '''<u>On the [[Volunteers]] Page, Track Progress in Real Time</u>''' of assigning author to pages (pending) and completion of pages (complete) as well as the date you reviewed the page and any notes of importance such as "non-WHO entity page" or check permissions for a figure. Open spaces in your area on this spreadsheet will alert the Editor-in-Chief to continue connecting potential authors with you.
 *Authors who are interested in the area in which you're Associate Editor, will be connected with you for the following <u>'''Onboarding Process'''</u>:
+#Ensure the  new author has completed the '''[https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 <u>Volunteer Form</u>]'''.
 #Create a username and password for a new author (see section below).  IMPORTANT: Add the information to the [[User Access Log]].
 #Refer them to the [[Author Instructions]], which contains information including links to the video tutorial, Word version of page templates, policy on figure inclusion, and how to cite CCGA pages.
 #Emphasize to authors to please use the supplied tables if applicable.
+#Once a page is assigned, ensure the author's name is added to the top of the page for clarity that the page is in progress.
 #If the author is a trainee, ensure they are working with a mentor or perform the mentor function if you're able to do so.
 #Set up a reasonable due date for the author.  For example, propose 4 weeks and if author agrees, send an Outlook invite for that due date that has a one week prior reminder prior to this deadline.
@@ Line 15: / Line 17: @@
 #Prioritize use of the tables, including helping the author to convert the content or doing so yourself if applicable.  If a table is not needed based on current knowledge, remove it so that the page doesn’t look unfinished, but if in the future information is added that could be put in one of the tables, convert it.
 #Ensure the authors have inserted references in the standard format using the PubMed extension.
-#Ensure the under construction note at the tope of the page has been removed.
+#Ensure the under construction note at the top of the page has been removed.
 *<u>Once a page has completed content, '''Add Categories and Page Citation Information'''</u>:
 #Add the Categories so that this page is now linked to the searching functions on the homepage (see section below).
-#Add the citation for the page in the Notes section at the bottom.  For example: * Citation of this Page: Naeini Y, Quintero-Rivera F. “Myeloid Sarcoma”. Compendium of Cancer Genome Aberrations (CCGA), Cancer Genomics Consortium (CGC), updated ? [accessed ?], [[Myeloid Sarcoma|www.ccga.io/index.php/Myeloid_Sarcoma]].  See this in action at https://ccga.io/index.php/Acute_Myeloid_Leukemia_(AML)_and_Related_Precursor_Neoplasms.
+#Add the citation for the page in the Notes section at the bottom.  For example: *''Citation of this Page'': Naeini Y, Quintero-Rivera F. “Myeloid Sarcoma”. Compendium of Cancer Genome Aberrations (CCGA), Cancer Genomics Consortium (CGC), updated {{REVISIONMONTH}}/{{REVISIONDAY}}/{{REVISIONYEAR}}, <nowiki>https://www.ccga.io/index.php/Myeloid_Sarcoma</nowiki>.  See this in action at the bottom of [[Acute Myeloid Leukemia (AML) and Related Precursor Neoplasms|Example]].
+##In order to have the updated section autopopulate on each page, you must use wiki-specific syntax.  Therefore, copy this example from the "Edit source" tab and place it in the correct location on the target page using the "Edit" tab or manually type or paste in the yellow highlighted text below.
+[[File:Citing page image.png|center|thumb|alt=]]
+*<u>'''Add WHO Copyright Information'''</u>:
+#Add the WHO copyright permission information for any disease overview page that shows WHO classification structure in the Notes section at the bottom (last entry).  You must use wiki-specific syntax.  Therefore, copy the following information using the wiki syntax in the "Edit source" tab, add it in the appropriate place near the bottom of the target page using the "Edit source" tab (make sure there's a space after the previous entry): <nowiki>*</nowiki>The hierarchical tumour classification structure displayed on this page is reproduced from the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours] with permission from the copyright holder, ©International Agency for Research on Cancer.
 ==How to Create a New User Account==