Extranodal NK/T-cell lymphoma

Haematolymphoid Tumours (WHO Classification, 5th ed.)

Primary Author(s)*

Ian King, PhD, FACMG

Maryam Mehdipour Dalivand, MD

WHO Classification of Disease

Structure Disease
Book Haematolymphoid Tumours (5th ed.)
Category T-cell and NK-cell lymphoid proliferations and lymphomas
Family Mature T-cell and NK-cell neoplasms
Type EBV-positive NK-cell and T-cell lymphomas
Subtype(s) Extranodal NK/T-cell lymphoma

Related Terminology

Acceptable Extranodal NK/T-cell lymphoma, nasal type; EBV-positive extranodal NK/T-cell lymphoma
Not Recommended Angiocentric lymphoma; lethal midline granuloma

Gene Rearrangements

Driver Gene Fusion(s) and Common Partner Genes Molecular Pathogenesis Typical Chromosomal Alteration(s) Prevalence -Common >20%, Recurrent 5-20% or Rare <5% (Disease) Diagnostic, Prognostic, and Therapeutic Significance - D, P, T Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
CTLA4-CD28 CTLA4-CD28 This fusion promotes tumor cell growth and survival by redirecting immune checkpoint signals[1] Chromosome 2q33 29% T: Therapeutically targetable through blockade of the CTLA4/CD28 pathway or its downstream signaling. No In extranodal NK/T-cell lymphoma, the CTLA4–CD28 fusion identifies a molecular subset in which aberrant CD28 costimulatory signaling likely contributes to tumor growth and survival. Clinically, this suggests potential therapeutic vulnerability to agents targeting the CTLA4/CD28 axis or downstream signaling pathways, although it is not specific enough to be a primary diagnostic marker and currently serves more as a biologic and potential predictive marker rather than a routine clinical test.

Individual Region Genomic Gain/Loss/LOH

Chr # Gain, Loss, Amp, LOH Minimal Region Cytoband and/or Genomic Coordinates [Genome Build; Size] Relevant Gene(s) Diagnostic, Prognostic, and Therapeutic Significance - D, P, T Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
6 Loss ~2.6 Mb interval within 6q21–q25[2] This locus harbors multiple candidate genes including ATG5, AIM1, PRDM1, PTPRK, HACE1 and FOXO3[3][4][5] D: Chromosome 6q loss is a recurrent abnormality in ENKTL that provides supportive molecular evidence of neoplasia and helps distinguish ENKTL from other T/NK-cell proliferations, but it is not sufficient for a standalone diagnosis.[6]

P: Loss of chromosome 6q in ENKTL is associated with deletion of key tumor suppressor genes and correlates with aggressive disease features and poorer survival, making it an adverse prognostic marker.

No Chromosome 6q loss in ENKTL is a recurrent molecular abnormality that supports diagnosis, indicates aggressive clinical behavior. Loss of chromosome 6q in ENKTL is not directly targetable but highlights deletion of tumor suppressor genes and activation of downstream pathways, such as JAK/STAT and NF-κB. This suggests potential susceptibility to pathway-specific therapies in high-risk patients. [7][8]

Other less common chromosomal alterations include gain of 1p, 2q, 6p, 10q, 11q, 12q, 13q, 17q, 19p, 20q, and Xp; and loss of 1p36, 2p16, 4q12, 4q31-32, 5p14, 5q34-35, 6q13-14, 6q16-27, 11q22-23, 12q, 13q12-14, 13q14-34, 17p13, and entire chromosome X[9][10][11][12][13].

Characteristic Chromosomal or Other Global Mutational Patterns

Chromosomal Pattern Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
Isochromosome 6p[14] Unknown Yes, isochromosome (6p) leads to loss of 6q tumor suppressor genes (PRDM1, FOXO3, HACE1) and gain of 6p genes, which may enhance proliferation.This dual effect is thought to contribute to more aggressive tumor biology compared with simple 6q deletions.[15][16] Unknown N/A
Isochromosome 7q[17] Unknown Unknown Unknown N/A

Gene Mutations (SNV/INDEL)

Gene Genetic Alteration Tumor Suppressor Gene, Oncogene, Other Prevalence -

Common >20%, Recurrent 5-20% or Rare <5% (Disease)

Diagnostic, Prognostic, and Therapeutic Significance - D, P, T   Established Clinical Significance Per Guidelines - Yes or No (Source) Clinical Relevance Details/Other Notes
JAK3 Activating mutations Oncogene Common[18] T No Pan-JAK and selective JAK3 inhibitors have been suggested as potential therapeutic options[18][19]. Clinical trials evaluating JAK inhibitors are in progress.
STAT3[20][21][22] Oncogene Recurrent[21][22] T No STAT3 inhibitor may have potential therapeutic benefit in patients with STAT3 activating mutation[23].
TP53[20] Tumor suppressor gene Common[24][25] P No Associated with advanced stage disease
STAT5B[20][21] Oncogene Recurrent[21] No No n/a
PTPRK[5] Other (acts on JAK/STAT pathway; underexpression leads to STAT3 activation[5]) No No n/a
MYC[26] Oncogene No No n/a
PDGFRA[27] Oncogene No No n/a
EZH2[28] Oncogene No No n/a
RAS/KRAS/HRAS Oncogene Rare[29][30] No No n/a
FAS Oncogene Common[31][32] No No n/a
KIT Oncogene Common[29][33] No No n/a
CTNNB1 Oncogene Common[29][34] No No n/a
DDX3X[20] Epigenetic modifier (RNA helicase) Recurrent[20] No No n/a
KMT2D (MLL2)[20] Epigenetic modifier Common[22] No No n/a
ARID1A[20] Epigenetic modifier No No n/a
EP300[20] Epigenetic modifier No No n/a
ASXL3[20] Epigenetic modifier No No n/a
BCOR[22] Epigenetic modifier 38.2%[22] No No n/a
RUNX3[35] Tumor suppressor gene No No n/a
MGA[20] Tumor suppressor gene No No n/a
PRDM1[36][4][37] Tumor suppressor gene Methylated in NK-92, KHYG-1, SNK-1, SNK-6 cell lines, 12/17 cases; Deleted in 8/18 cases; Mutated in NK-92 and KAI3 cell lines, 1/26 cases[36] No No n/a
ATG5[36] Tumor suppressor gene No No n/a
AIM1[36] Tumor suppressor gene Methylated in NK-92, HANK1, NK-YS, SNK-1, YT cell lines; Mutated in in SNK-1 and SNK-6 cell lines[36] No No n/a
FOXO3[36][4] Tumor suppressor gene Mutated in 2/26 NKTCL and 1/9 ANKL[36] No No n/a
HACE1[36][27] Tumor suppressor gene Mutated in 6/9 (67%) cell lines and 5/15 (33%) primary tumors[38] No No n/a

Note: A more extensive list of mutations can be found in cBioportal (https://www.cbioportal.org/), COSMIC (https://cancer.sanger.ac.uk/cosmic), ICGC (https://dcc.icgc.org/) and/or other databases. When applicable, gene-specific pages within the CCGA site directly link to pertinent external content.

Epigenomic Alterations

N/A

Genes and Main Pathways Involved

Huang, et al described deregulation of several signaling pathways in NK T-cell lymphoma, main ones listed below[27]. A review by De Mel, et al, also outlines key molecular pathways involved in the pathogenesis of ENKTL[39].

Gene; Genetic Alteration Pathway Pathophysiologic Outcome
JAK3, STAT3, and STAT5B; Activating mutations[27][39] JAK/STAT pathway Increased cell growth and proliferation
MYC, RUNX3[39] MYC Increased cell proliferation and survival
AKT and related genes[27] AKT pathway Increased cell growth, proliferation and survival
NF-κB related genes[27][39] NF-κB pathway Increased cell proliferation
PDGFRA[27][39] PDGF pathway Increased cell proliferation and survival
NOTCH1[39] NOTCH1 pathway Increased cell proliferation
AURKA[39] Aurora kinase pathway[26] Increased cell proliferation and cell cycle dysregulation

Genetic Diagnostic Testing Methods

  • Select cases may require TCR gene rearrangement studies; otherwise, not routinely performed.
  • EBV PCR testing may be used for disease monitoring

Familial Forms

N/A

Additional Information

 
Extranodal NK T-cell lymphoma, nasal type (HPS). Angiocentric and angiodestructive growth pattern.

This disease is defined/characterized as detailed below:

  • Lymphoma of NK or T-cell lineage strongly associated with Epstein-Barr virus[40]. The lineage (NK or T-cell) has no clinical significance[41].
  • Divided into nasal and non-nasal types, the latter most often occurring in the skin and intestinal tract[42][40].
  • It is a destructive angiocentric disease characterized by vascular destruction and necrosis[43].
  • Differential diagnosis: sinonasal carcinomas and other lymphomas of the nasal cavity, such as diffuse large B-cell lymphoma[44].

The epidemiology/prevalence of this disease is detailed below:

  • Most prevalent in East Asia and Latin America.
  • Represents less than 1% of non-Hodgkin lymphomas in the United States
    • Highest incidence among Asian Pacific Islanders and Hispanic populations[45].

The clinical features of this disease are detailed below:

 
Extranodal NK T-cell lymphoma, nasal type (HPS). Angiocentric and angiodestructive growth pattern.

Signs and symptoms - Nasal mass, nasal obstruction, nasal bleeding; Hoarseness, dysphagia, halitosis, airway obstruction, dysphonia; Abdominal pain, GI bleeding, bowel perforation[46]; B symptoms (fever, weight loss, night sweats) associated with higher clinical stage[47]

Laboratory findings - No specific findings; Cytopenias

The sites of involvement of this disease are detailed below:

  • Most are nasal type involving the upper aerodigestive tract
  • Extranasal type may involve skin, testis, and gastrointestinal tract[46].
  • Bone marrow involvement is uncommon[48].

The morphologic features of this disease are detailed below:

  • Diffuse infiltrate composed of admixture of small, medium, or large and anaplastic cells.
  • Cells have irregularly folded nuclei and moderate pale cytoplasm.
  • Loss of mucosal glands.
  • Angiocentric and angiodestructive growth pattern with coagulative necrosis.
  • Usually see apoptotic cells and mitotic figures
     
    Extranodal NK T-cell lymphoma stained with CD2 (top left), CD56 (red chromogen; top right), EBER in-situ hybridization (bottom left) and TIA1 (bottom right).

The pitfalls can include:

  • Mucosal ulceration and superimposed inflammation can mimic an inflammatory process, particularly in less aggressive cases[49].
  • Pseudoepitheliomatous hyperplasia of the overlying mucosal epithelium can mimic squamous cell carcinoma[50][51].

The immunophenotype of this disease is detailed below:

Positive (universal) - EBER / EBV

Positive (majority) - cytoplasmic CD3ε, CD2, CD56, granzyme B, and TIA-1

Positive (subset) - TCR αβ/γδ, HLA-DR, CD25, pSTAT3, CXCL13, IRF4/MUM1, CD16, Fas, FasL, MATK, CD30[52][53][54][55][56][57][58]

Negative (universal) - CD4, CD8

Negative (subset) - Surface CD3 (subset of T-cell lineage)[46]

Links

5th edition World Health Organization (WHO) classification system

References

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Notes

*Citation of this Page: King I, Dalivand MM. “Extranodal NK/T-cell lymphoma”. Compendium of Cancer Genome Aberrations (CCGA), Cancer Genomics Consortium (CGC), updated 04/21/2026, https://ccga.io/index.php/HAEM5:Extranodal_NK/T-cell_lymphoma.


*Primary authors will typically be those that initially create and complete the content of a page.  If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the Associate Editor or other CCGA representative.  When pages have a major update, the new author will be acknowledged at the beginning of the page, and those who contributed previously will be acknowledged below as a prior author.

Prior Author(s): Teodora Popa, MD, Amanda Xu, MD